I think you need find out which file is defferent by Beyond Compare 3, then you know which file need replace. Normally, you don't need update configure file.
BTW:Because TCUP is too big, and lots of software and plugins are unuseless to me. So i always custom TC by myself.
BTW:Because TCUP is too big, and lots of software and plugins are unuseless to me. So i always custom TC by myself.

